Torq
sorry to hear that Yes is sounds like your batteries are junk now. Li-poly are not like nihm's you can not discharge them all the way down. you have to stop flying when they get to 3v under load per cell. you should have stopped flying your 3 cell battery when it went down to 9v under load. if your flying a micro heli it is hard because they will stay flying at 9 volts
you should have a good charger that tells you how much mah your putting back into the battery. you shouldn't discharge a battery past 80% capacity. if you have a 1000mah pack you should only be charging back 800mah to make it full charge. you have to run some test flights to see how much your using like a 5 minute flight then charge. then maybe 7 minute and so on. with my micro's with a brushless motor on a 1200mah pack i usually stop flying at around 10-12 minutes. if you have a brushed motor the time will be a lot shorter.
they sell a lipoly warning light that you could install that will flash red when you get at 9v under load i have some and they work good. sometimes you can also set your ESC to give you a warning when you get to 9V under load.
you should read the Lipoly warnings also in this section it has a lot of good info. i hope you get a new battery soon and get back flying
